HsaEX0074231 @ hg19
Exon Skipping
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:27815]
Coordinates
chr8:144773770-144777554:+
Coord C1 exon
chr8:144773770-144773883
Coord A exon
chr8:144774415-144774500
Coord C2 exon
chr8:144775841-144777554
Length
86 bp
Sequences
Splice sites
3' ss Seq
CTTTTTACTTACATTTTCAGAGT
3' ss Score
9.81
5' ss Seq
TAGGTGTGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GATTTTGCAGCCCCAGACCAGACCTCGTCTCTCGCCTGGAACAGTGGGAGGAGCCGTGGGTTGAAGACCGGGAGAGACCTGAGTTCCAGGCAGTGCAGAGGGGACCCCGGCCAG
Seq A exon
AGTGGGATGGAGCAGCTATGTGAACACGAGCCCTGGGAGGTCCCCGGGTATGTGGAGTCCCCGACTGTGGAGTGTCAGGTTCCTAG
Seq C2 exon
GGGCAAGGAAGTCTGCAGACCCCAAGAGACCTTGTGATCATCCAGCTTGGGCTCACAAGAAAACCCACGTGCGGCGAGAAAGAGCCAGGGAAGGAAGCAGCTTTAGGAAGGGCTTCAGGCTGGACACGGATGACGGGCAGCTTCCCAGAGCTGCTCCAGAAAGGACAGACGCCAAGCCCACGGCTTTCCCGTGTCAGGTGCTCACGCAGCGTTGTGGGCGGCGGCCGGGCCGCAGAGAGCGCCGGAAGCAGCGCGCAGTAGAGCTGTCATTCATCTGCGGCACGTGCGGGAAGGCGCTCAGCTGCCACAGCCGGCTGCTCGCTCACCAGACGGTGCACACGGGAACCAAGGCCTTCGAGTGCCCCGAGTGCGGCCAGACCTTCCGGTGGGCTTCAAACCTGCAGCGCCACCAGAAGAACCACACGCGCGAGAAGCCCTTCTGCTGCGAGGCCTGCGGGCAGGCGTTCAGCCTGAAGGACCGCCTGGCTCAGCACCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135_MULTIEX1-11/11=9-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.362 A=0.857 C2=0.252
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
PF051298=Elf1=WD(100=23.3),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=8.7),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=8.7),PF0009621=zf-C2H2=WD(100=8.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCAGACCTCGTCTCTC
R:
GTGGGTTTTCTTGTGAGCCCA
Band lengths:
170-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)