HsaEX0074234 @ hg38
Exon Skipping
Gene
ENSG00000181135 | ZNF707
Description
zinc finger protein 707 [Source:HGNC Symbol;Acc:HGNC:27815]
Coordinates
chr8:143684481-143690123:+
Coord C1 exon
chr8:143684481-143684542
Coord A exon
chr8:143687994-143688067
Coord C2 exon
chr8:143690057-143690123
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTGAGATG
3' ss Score
4.74
5' ss Seq
CGGGTTCGT
5' ss Score
3.84
Exon sequences
Seq C1 exon
AAAAGTCTGGGCTACCGGCGCGGCGTAGTGGATGCAGCATCCTAGTGGAGGACGCCCCTGTG
Seq A exon
ATGGAGTCTCACTCTGTTGCCCAGGCTGGAGTACAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCGG
Seq C2 exon
ATCTGCCCTCCTTGGCACTGTGCTTCCCCAGAGGGGTGGCCTCGCTGTTCCCATGGACATGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000181135_MULTIEX1-5/11=C1-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.071
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGTCTGGGCTACCGGCG
R:
TGGGAACAGCGAGGCCAC
Band lengths:
115-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development