HsaEX0074242 @ hg19
Exon Skipping
Gene
ENSG00000197951 | ZNF71
Description
zinc finger protein 71 [Source:HGNC Symbol;Acc:13141]
Coordinates
chr19:57112875-57135540:+
Coord C1 exon
chr19:57112875-57112959
Coord A exon
chr19:57125180-57125306
Coord C2 exon
chr19:57132636-57135540
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTGGGTTTCCTCTTACAGGAA
3' ss Score
11.36
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
CACTGTTGGTCACCGCAGGCCTGTCTTCCTATTCACCGTGGGCAGCAGAGGGATGGCTGCTCAGCTGCTGACTGATGAGGCACTG
Seq A exon
GAATCAGTGACGTTCAGGGATGTGACTGTGGACTTCACCCAGGAGGAGTGGCAGCAGCTGGAGCCTGCCCAGAAGGACCTGTACAGGGATGTCATGCTGGAGAACTACAGGAACCTGGTCTCACTGG
Seq C2 exon
ACTGGGAGACTAGACCTGAAATGAAAGAGTTGGATCCAAAGAATGACATTTCGGAAGACAAGCTCTCCGTTGTTGGGGAGGCCACGGGGGGACCCACGAGGAATGGTGCCAGGGGTCCTGGCTCAGAAGGAGTGTGGGAACCAGGCAGCTGGCCAGAGAGGCCGCGGGGAGATGCAGGTGCAGAGTGGGAGCCATTGGGAATTCCCCAGGGGAACAAACTCTTAGGGGGCTCAGTACCCGCATGTCATGAACTGAAGGCATTTGCCAACCAAGGCTGTGTCCTGGTCCCACCACGGCTGGACGACCCCACAGAAAAGGGGGCCTGTCCACCCGTAAGGCGTGGCAAGAACTTCTCCAGCACTTCAGACCTCAGTAAGCCCCCCATGCCCTGCGAGGAGAAGAAAACCTACGACTGCAGCGAGTGTGGCAAGGCCTTTAGCCGAAGCTCGTCCCTGATAAAGCACCAAAGGATCCACACGGGAGAAAAGCCGTTTGAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197951_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF127602=Zn_Tnp_IS1595=WD(100=9.4),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF0041217=LIM=WD(100=13.7),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.1),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3),PF134651=zf-H2C2_2=WD(100=5.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGACTGATGAGGCACTG
R:
GCCCCCTAAGAGTTTGTTCCC
Band lengths:
251-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)