HsaEX0074256 @ hg38
Exon Skipping
Gene
ENSG00000227124 | ZNF717
Description
zinc finger protein 717 [Source:HGNC Symbol;Acc:HGNC:29448]
Coordinates
chr3:75783306-75785567:-
Coord C1 exon
chr3:75785384-75785567
Coord A exon
chr3:75784915-75785002
Coord C2 exon
chr3:75783306-75783364
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCCTGGGTTGCGTTTACAGAAG
3' ss Score
6.79
5' ss Seq
AGGGTACTT
5' ss Score
5.15
Exon sequences
Seq C1 exon
GCGGCACCCAGAGGCGGTCTTGTAGCTGGGCCAGCCTGGGGCTTGGTTCTATGTCCCTGCGGGTCGGTGCGAGGGCGAAGAGGAACCCGTGGGCCCGGGGGATCCCGGGGGGCCGGACCAGTGTTCCCCAGTTGTGGGAGCAGACGCGTGGGCGCATCGCGGGCGGGCAGGGCCTGAAGTGCAG
Seq A exon
AAGTTTATACGAGACCTAGTTTCCAGGGAAGAACTCACTGATGCCGCGAGGGAGATGGGGTACTGGATGATGGTCTTCAGCCTTAAGG
Seq C2 exon
CTATGTTTCCAGTGTTCTCTGGCTGTTTCCAAGAGCTACAAGAAAAGAATAAATCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227124_MULTIEX1-1/9=C1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTGGTTCTATGTCCCTGC
R:
AGCTCTTGGAAACAGCCAGAG
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development