HsaEX0074263 @ hg19
Exon Skipping
Gene
ENSG00000197302 | ZNF720
Description
zinc finger protein 720 [Source:HGNC Symbol;Acc:26987]
Coordinates
chr16:31734579-31765857:+
Coord C1 exon
chr16:31734579-31734674
Coord A exon
chr16:31744888-31744948
Coord C2 exon
chr16:31765087-31765857
Length
61 bp
Sequences
Splice sites
3' ss Seq
CTTTCCACACTTCTCTCCAGCTC
3' ss Score
7.07
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GTCTCGCTGTCTCTAAGCCGGACCTGATCACCTTTTTGGAGCAAAGGAAAGAGCCCTGGAATGTGAAGAGTGCAGAGACAGTAGCCATCCAGCCAG
Seq A exon
CTCCTGAAGAGCACCATTCTGCCTAATGTTTCTATGAGTTTGGCTACTGTAGATACTTTAT
Seq C2 exon
ATATCTTTTCTCATGATACTCAAGGCCTCTTAAGAAAGAAGCTTATAGAAGCATCATTCCAAAAAGTGATATTGGATGGATATGGGAGCTGTGGCCCTCAGAATTTAAACTTAAGGAAAGAGTGGGAAAGTGAGGGTAAGTGTGAAGGTCACAATGGATATTATGATGGACATACAAAATGTAAGACAACTACCTATAACAAAAACCTCACTGTTACAGGAGGTCAAAAACATGAAAAAACTCAATTTATGTCAGTTGCTTTTTCTAAACCATGTGTTTCTGTAAGTAAGTGTCAACATCAATTTTTGAAACTTACCTTTTCTTTTAAAGGAAATTTGGATAATCCGAATAGTGACTTAGTCCATGTTTCAAATAATCATTTAAACCAATTAAAATATAGAACTGGAGTAAATGTTCAGTCAAATATTTCTGAAAAGGAGAGATTTAAAAACGAGGAGGTGATTTCTAAATATGATCAATTTGATGGATCTTTGTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197302-'2-5,'2-2,3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAGACAGTAGCCATCCA
R:
AAATTCTGAGGGCCACAGCTC
Band lengths:
132-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)