HsaEX0074265 @ hg19
Exon Skipping
Gene
ENSG00000182903 | ZNF721
Description
zinc finger protein 721 [Source:HGNC Symbol;Acc:29425]
Coordinates
chr4:429559-432421:-
Coord C1 exon
chr4:432373-432421
Coord A exon
chr4:431235-431300
Coord C2 exon
chr4:429559-429668
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTATTATCCTTATTTTACAGAGG
3' ss Score
9.25
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TTTCCTCGCTGATCTCTTCATGCCGTGTAATTTCACATGGACTTTCAAG
Seq A exon
AGGAAGGAACAGAGCCACAGAGAAAAATGACTTGCTCACAACAGAAGAGCCAGTAGTAAAACACAG
Seq C2 exon
GTTTGACTTGCAGTATCCAGAGGAAATGTGGAGAAACACAGTTGTACAGAAGGGAAGAAAATAGGTTGATACTCCTGTTGCAGGACCATTTGAAGTCTGAGAGTTTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182903-'10-14,'10-13,12-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.555 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTCGCTGATCTCTTCATGC
R:
CTGGAAACTCTCAGACTTCAAATGG
Band lengths:
159-225
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)