HsaEX0074279 @ hg19
Exon Skipping
Gene
ENSG00000234444 | ZNF736
Description
zinc finger protein 736 [Source:HGNC Symbol;Acc:32467]
Coordinates
chr7:63768839-63774531:+
Coord C1 exon
chr7:63768839-63769003
Coord A exon
chr7:63773186-63773229
Coord C2 exon
chr7:63774251-63774531
Length
44 bp
Sequences
Splice sites
3' ss Seq
TTCTGTGGTTTCTTCTCTAGGGT
3' ss Score
11.55
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
TTTTTCAGATTAACTAAGTAATTCATATTGTACATTTCTGAAATTGAAGTACGCACAGCTTCAATTCTGTGCAGGGAGGATGCAGCAGGAGAGAATATCCTGGGCACATCTTTCTGGAGAATCACTTTTACTACAAGATTTGTAAGAAACAAATTTATTTCCAAG
Seq A exon
GGTGGCCAACTTGGGTGTCTTCCTCTGCCAGGGTCAAGGACAAG
Seq C2 exon
GATTGAAACGGGTGGGGCCTGGAGCCCTAGCCAATCAGTGGCGCCAGCGTGAAACTGTCCAATCAAGTGCGCAGCTACAGAGGAAGAGGCGGCCTCTTCAATATGGCGGGGCCTTTGTCTCCTAGCTTCCGGGCTCTGATCCTAGTTCGCGTCTCCACTGTTCCATCTCCTCCGTTCCTGGAGTTCCTCGGTGACTCTACTATAGCTTCTGTTATCCTGTGACCTGCAGGTACTGGGAGATCCATAGGGAGGACGGCGGAACATCTGGAGGCTGGGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000234444_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGCACATCTTTCTGGA
R:
TGCGCACTTGATTGGACAGTT
Band lengths:
141-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)