HsaEX0074280 @ hg19
Exon Skipping
Gene
ENSG00000172687 | ZNF738
Description
zinc finger protein 738 [Source:HGNC Symbol;Acc:32469]
Coordinates
chr19:21541732-21544660:+
Coord C1 exon
chr19:21541732-21541945
Coord A exon
chr19:21543277-21543398
Coord C2 exon
chr19:21544568-21544660
Length
122 bp
Sequences
Splice sites
3' ss Seq
TGTTTTGTTTTGTTTTTGAGATG
3' ss Score
4.16
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
Exon sequences
Seq C1 exon
GTCCAATCAGGCACGCAGCTTGAGCGGAGAGGACGGCTTCCGGGATGTGGCGGGATTTGTCCGCTTCTTTGTCTTTGGCTGCCGCTGGAACTCCGGGTCTCGTCTTCACTGCTCTGTGTCCTCTGCTCCTAGAGGCCCAGCCTCTGGTCCTGTGACCTGCAGGTATTGGGAATCCACAGCTAAGACGCCGGGACACCCTGGAAGCCTAGAAATG
Seq A exon
ATGGAGTCTCGCTCTGTCTCCCAGGCTGGAGTGCAATGGCGCGATCTCGGCTCACCTCAACCTCCGCCTCCCGGTTTTAAACAATTCTCCCACTTCAGCCTCCTTAGTAGCTGGGATTACAG
Seq C2 exon
GACGACCTGAGGTATGGAGTGTATCCTGTCAAGGGGGCAAGTGGATACCCTGGGGCTGAGAGGAATCTTCTGGAGTACTCTTATTTTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172687-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=0.463 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=PU(92.1=85.4)
C2:
PF029069=Fe_hyd_lg_C=PU(26.7=38.7)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGTGGCGGGATTTGTC
R:
AAGATTCCTCTCAGCCCCAGG
Band lengths:
242-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)