HsaEX0074316 @ hg19
Exon Skipping
Gene
ENSG00000196417 | ZNF765
Description
zinc finger protein 765 [Source:HGNC Symbol;Acc:25092]
Coordinates
chr19:53905318-53907873:+
Coord C1 exon
chr19:53905318-53905444
Coord A exon
chr19:53906004-53906090
Coord C2 exon
chr19:53907727-53907873
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTAGTTTGTTTTTTTTCCAGACA
3' ss Score
7.69
5' ss Seq
CAGGTGCCA
5' ss Score
3.75
Exon sequences
Seq C1 exon
GGTCTATTGACATTCAGGGATGTGGCCATAGAATTCTCTCAGGAGGAGTGGAAATGCCTGGACCCTGCTCAGAGGACTCTATACAGGGACGTGATGCTGGAGAATTATAGGAACCTGGTCTCCCTGG
Seq A exon
ACAGGGTCTTGCTGTGTTGTTGAAATTCATCCTGATCTCCTGGGCTCCAGAGATCCTCCTTAGTCTCCCGAGTAGCTGGGATTACAG
Seq C2 exon
ACGGAGTCTCGGTCTGTCACCCAGGCTGGAGTGCGGTGGTGCGATCTTGGCTAACTGCAGCCTCTGCCTCCCAGGTTCAAGTGATTTTCCTGCTTCAGTCTCCCAAGTAGCTGGGACTACAGGCACATGCCACCACACCTGGCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196417-'3-9,'3-7,4-9
Average complexity
C2
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATACAGGGACGTGATGCTGGA
R:
GTGCCTGTAGTCCCAGCTACT
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)