HsaEX0074343 @ hg19
Exon Skipping
Gene
ENSG00000196453 | ZNF777
Description
zinc finger protein 777 [Source:HGNC Symbol;Acc:22213]
Coordinates
chr7:149152268-149158214:-
Coord C1 exon
chr7:149157588-149158214
Coord A exon
chr7:149157121-149157248
Coord C2 exon
chr7:149152268-149153128
Length
128 bp
Sequences
Splice sites
3' ss Seq
TCCGGGGGCCCGGGCCGGACAGC
3' ss Score
-23.85
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
AAGGGAACGACCCCGGGTTCTGGGTGTGAGAGGCGCAGGGGATCGGCGGGAGGAAGGCTGTCGGAGCCAATCAAGCCGCCTCCAGACCCCAGCACGTCGCCTGGGCTGCGCGCTCCGACTGCGCCTCCGCCCGCGCGCCTCCCGGCCTCGCCCGAGGGTGCCTGGGCAGGCGAGGACCCCAGGTGAGAGGCCGGAGGGTCCTGGAGGGTGGGAGGCCCCGGCGGTTCGGCCCGGGCTCCACGACGGGCTGGCCCGGGCTCAGGGCGTGTCCGTCGCCGCCGGGCGGCTCGCTCGACACTGTTCGCTCCTACCGGCTGTAGATGGAGCTGTCTGGGTTCCGGCAGCCTCCGACGAGCCTCGGAGTGTTTCTCTTTAAACGGCCTGAGAGGGACATGCCTCCCAGGATGCAGTTTGTAGCAACATGGCAGCTGCTGTGCAGCTCCCCTGCTAAAGAGGCGCCGGGACGGCAGCGCAGCTCGCAGCCGGGGCCGGGGCCGGAG
Seq A exon
AGCGCAGGGCCATGGCCGAGGCGGCCCCGGCTCCTGTGAGGGCGGCCCGCGCGCGCACGGACGCGCGGCCTCGGGGCCCCGGGGACGGCCTGCGTGTCCCGGGCTCGGCGGCCCGGCCTGGGATCTCG
Seq C2 exon
GTTCAGCAGCTGGACATGGAGAACCAACGCTCATCACCTCTGTCGTTCCCCAGTGTTCCACAAGAAGAAACCTTACGTCAGGCCCCTGCTGGACTCCCCCGAGAAACTCTGTTCCAATCCCGCGTTCTTCCTCCCAAAGAAATTCCTTCTTTGTCTCCCACCATTCCCCGTCAAGGCTCCCTGCCCCAAACTTCCAGTGCTCCCAAGCAAGAGACTTCTGGCCGGATGCCACATGTGCTCCAGAAGGGACCCTCACTCCTGTGTTCTGCCGCTTCTGAGCAAGAGACTTCTCTCCAGGGCCCCCTGGCTTCCCAGGAAGGGACCCAGTATCCACCCCCAGCTGCTGCTGAACAAGAAGTCTCCCTTCTCTCCCACTCCCCCCACCACCAGGAAGCCCCCGTTCACTCCCCTGAAGCTCCTGAGAAAGACCCCCTGACCCTTTCCCCAACAGTTCCCGAGACTGACATGGACCCGCTGCTCCAGAGCCCGGTTTCCCAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196453_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.638
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF124173=DUF3669=WD(100=28.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACGGCCTGAGAGGGACAT
R:
GAAGAACGCGGGATTGGAACA
Band lengths:
257-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)