HsaEX0074374 @ hg19
Exon Skipping
Gene
ENSG00000196152 | ZNF79
Description
zinc finger protein 79 [Source:HGNC Symbol;Acc:13153]
Coordinates
chr9:130191111-130197495:+
Coord C1 exon
chr9:130191111-130191199
Coord A exon
chr9:130195553-130195675
Coord C2 exon
chr9:130197369-130197495
Length
123 bp
Sequences
Splice sites
3' ss Seq
ATGAATTCTCATGATATTAGGAG
3' ss Score
3.56
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
TACTGCCTTCCCCAGGCCCTGCCCTTCCCCAAGAGGAAAACACAGGAGAGGAAGGAATGGCTGCTGGTCTCCTCACAGCTGGGCCCCGG
Seq A exon
GAGGAAGAATCAATGGGGATTGATGCTGCGGGAAAGGAGAGGATAACACCCAGGTTGCTGGCTTGGCCAGCTAGGTGAACAGAGGCCCCATTCCCTGAGCTGGGAACAGACAAGGAACAGCAG
Seq C2 exon
GGATCCACATTCTTCAGCAGTGTGACGGTAGCTTTTGCACAGGAAAGGTGGAGGTGCCTCGTGTCTACTCCACGGGACAGGTTCAAGGAGGGGATACCAGGAAAGTCCAGGAGCCTTGTCCTACTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196152-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.950 A=0.800 C2=0.186
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=93.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTTCCCCAAGAGGAAAAC
R:
AGTAGGACAAGGCTCCTGGAC
Band lengths:
194-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)