HsaEX0074377 @ hg38
Exon Skipping
Gene
ENSG00000173875 | ZNF791
Description
zinc finger protein 791 [Source:HGNC Symbol;Acc:HGNC:26895]
Coordinates
chr19:12610918-12623826:+
Coord C1 exon
chr19:12610918-12611082
Coord A exon
chr19:12612226-12612365
Coord C2 exon
chr19:12623700-12623826
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTTTTTTTTAACAGATG
3' ss Score
11.86
5' ss Seq
ATAGTGGGT
5' ss Score
0.86
Exon sequences
Seq C1 exon
GCAAATGCGTGCTACGTCACTGTGCGATCGGGTTGTGCTTAGCTTGGGGTCTCCTGGCCCCTTGACGCGTCAGGTTGCTGTACCCCTGCATCGGATGCGCTGTACCCTGCGCTGGCTCCGTGAACCTTAGGGACAACACCGGGACACCCGCGAGGCCGGAAAATG
Seq A exon
ATGGGGTCTGGCTGTGTTGCTCAGGCTGATCTTGAACTCCTGGGCTCAAGCGATCCTCCACCCTCAGCATCCCAAAGTGCTAGGATTCCAGGCATGAGCTACTATTACCGGCCCAACATTCTCATTTTCTGAAAGCAATA
Seq C2 exon
GACTCAGTGGCTTTTGAGGATGTGTCTGTGAGCTTCAGCCAGGAGGAGTGGGCTCTGCTGGCTCCTTCACAGAAGAAACTCTACAGAGATGTGATGCAGGAAACATTCAAGAACCTGGCATCTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173875_MULTIEX1-1/4=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.246 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAATGCGTGCTACGTCACTG
R:
TTTCTTCTGTGAAGGAGCCAGC
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development