HsaEX0074448 @ hg38
Exon Skipping
Gene
ENSG00000198040 | ZNF84
Description
zinc finger protein 84 [Source:HGNC Symbol;Acc:HGNC:13159]
Coordinates
chr12:133037292-133041482:+
Coord C1 exon
chr12:133037292-133037545
Coord A exon
chr12:133038875-133038881
Coord C2 exon
chr12:133041285-133041482
Length
7 bp
Sequences
Splice sites
3' ss Seq
GAGTTGTTTATATCTTACAGAAA
3' ss Score
6.93
5' ss Seq
AAGGTTATT
5' ss Score
4.15
Exon sequences
Seq C1 exon
ACTCTTGGTAATGCTTGCAGGTGGCCCGTTCTTCCTCTTTGTCCTTCGCTGCCACGTGAGAGGGGAGTGTACGCGTGTGCGCGCGTGCGAGTGTGCGCGTGTGCAGTCCCCGACTCGTCCCGGCCCGTTCGGAGCCGCCCGGGAGCGCACAAAGGCCGACGGTTTGGGCGCGTGCGCGGGACACGGGGGACGGGCGGTGTCACGTGATCGCGAGGCCGCGGGCGCGCGGGCGCGACTCGGCGGCGGCGTCTTTT
Seq A exon
AAATAAG
Seq C2 exon
ATCCTGGTCCCTACAAATAAGCCTGCTCATGTGAGATAAGAAAGGAGTTCCTGGAACCAGGAATTCATTCTCAGTGTAGAAGACCTAGCTGAGACCTCACTCCACAGTTTTGGGGCAGAAGCAGAAGAGACGCACAGTAGAACCGATCTCAGCCTTGCTGATCATCTCGTACAGCAGCAGAAAATGACCATGTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198040-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
5' UTR
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCACGTGATCGCGAGG
R:
TCTTATCTCACATGAGCAGGCT
Band lengths:
99-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development