HsaEX0074464 @ hg38
Exon Skipping
Gene
ENSG00000197385 | ZNF860
Description
zinc finger protein 860 [Source:HGNC Symbol;Acc:HGNC:34513]
Coordinates
chr3:31981774-31991628:+
Coord C1 exon
chr3:31981774-31981902
Coord A exon
chr3:31986248-31986409
Coord C2 exon
chr3:31988660-31991628
Length
162 bp
Sequences
Splice sites
3' ss Seq
TTATTGCATGATAAATGAAGCCT
3' ss Score
-2.76
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCACACGATGCTGCGCCAGACGCTCCTACACAGTAACCTGGAAATTATCACCGGCGGAGCAAAGTCACAGCTCAGGGAGGCCCTCCGCGTTGTCTGGCGGAGGAGGGGAGTGGCAGGTGATCCTCACAG
Seq A exon
CCTAATTTTACTGAGGAAGAAACAGAAACTCAAAGAGGAGGAGTTGATTCTGAACCAAGGCCTTCTGACTCCAAGTCCAGTGTTCTTGCTGCCTGAACTTCAGCTGTGACGTGTACATGCAACCTTACCATCCAGTGGGAAGAAGAAAATACCAGAATTAAG
Seq C2 exon
TCACTCTAGGAAAGCCAGCTGCCATGACATAAGGATACTCAGGCCACCAATGGATAGCCCAGGCAGGAGGCATGAAGGTGTGCCAGCCACTGTGTCAGTCACCTTATAAGCAGATTTTCTGAGACCTGCTAACAGCCATGTGAGTGACCTTGGAAGTAGGTTGTCACCAGTCAAGCCTTGAGATGACTGCAGCCATGACCCACAGCTTGACTACAACCCAGAGAGACACTGAGCCAGGAACACCCAGCTGAAGTGCCTCCAAACCCCGACCCACAGCGACTGTGAGATAATCAGTGTTTGTTGCCTTAAGCCACGAAGTTTGTGATAATTTGTTTCTCGGAAACAGATAACTAATACAGAGCAGGAAGCAGATCGCCTCAGTGAAGGTCACACTGCAGCACTATTGATTTCTAAAGACTCATGTTACGTGAGGAAGCAGCTCAGAAGAGGAAAGAAAAGGAGCCAGGCATGGCTCTTCCTCAGGGACACTTGACTTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197385_MULTIEX1-1/4=C1-3
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0135222=KRAB=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.9),PF0009621=zf-C2H2=WD(100=3.6),PF0013017=C1_1=WD(100=8.4),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=3.5),PF134651=zf-H2C2_2=WD(100=3.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAAATTATCACCGGCG
R:
CCAAGGTCACTCACATGGCTG
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development