HsaEX0074479 @ hg19
Exon Skipping
Gene
ENSG00000167232 | ZNF91
Description
zinc finger protein 91 [Source:HGNC Symbol;Acc:13166]
Coordinates
chr19:23557440-23578273:-
Coord C1 exon
chr19:23578127-23578273
Coord A exon
chr19:23570923-23571046
Coord C2 exon
chr19:23557440-23557566
Length
124 bp
Sequences
Splice sites
3' ss Seq
TATATTTTATTTTATTTTAGAGA
3' ss Score
8.28
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTCTCTCGCTGCCGCCGGAGTTTCCAGGTCTCGACTTCACTGCTCTGTGTCCTCTGCTCCAGGAGGCCCAGCCTGTGTGGCCCTGTGACCTGCAGGTATTGGAGAGCCACAGCTAAGATGCCAGGAACCCCTGGAAGCCTAGAAATG
Seq A exon
AGACAGGGTCTCACTCTGTTGCCCAGGCTGAAGTACGGTGACATAATCTTGGCTCACTGCAACCTCCGCCTCTCGGGTTCCAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGTGATTACAG
Seq C2 exon
GGACTGTTGACATTTAGGGATGTGGCCATAGAATTCTCTCCGGAGGAGTGGCAATGTCTGGACACTGCACAGCAGAATTTATATAGGAATGTGATGTTAGAGAACTACAGAAACCTGGCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167232-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.257 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACTTCACTGCTCTGTGTCC
R:
CCAGGAAGGCCAGGTTTCTGT
Band lengths:
243-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)