HsaEX0074480 @ hg19
Exon Skipping
Gene
ENSG00000167232 | ZNF91
Description
zinc finger protein 91 [Source:HGNC Symbol;Acc:13166]
Coordinates
chr19:23487248-23491899:-
Coord C1 exon
chr19:23491726-23491899
Coord A exon
chr19:23490118-23490204
Coord C2 exon
chr19:23487248-23487933
Length
87 bp
Sequences
Splice sites
3' ss Seq
CGTCACTCTCTCTGTTTTAGGTA
3' ss Score
12.83
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GGCCCAGACAGAAGAGAAGAGTCACATCATCTAGATGATGAATGAAAAGATATGTCATTATTCTCCTTTGGGCAGTGCTTCTGCAGAAAAGTTGCACCTTCTAGGTGTTGGACTCAGCAATATATCACAATGTCTGCAGTATTTTGGAAGGAGAGGAGAGTCACCATTACTTAG
Seq A exon
GTATGGCCCAGGCAGGAGAGAAGGGTCATATCACCTAAGCTCTGGATTCGCAGATAGGCCCCAATCTCTTTTTTGGGCAATGCTCGG
Seq C2 exon
TCTATCTTCAATTTACAGACCTTGGCTTTTCTACCCCAATTCAAGAAGTCACTTCTTCAGTCAACCAAACCAATTACAAAATTGTGTTCCAATGTCACATGTTCAAAAATAAACAGTTCCTGAAAAGATGTAAGCTTTAAATGGAATTAGTCAGCATTTTCAATTTTGGTTAGTGCCTTTAAAGCTAGTTTATCTCTGTTTCTATATTAATCGGAATGAAAAGAAACATTTTTGACTTGGCATTGAATGACAGTTGTGATTTTAGTAAATTTCTTGCTCACACATAGGAGCAACAAAAAAATACTTTTTTTTTTTTGAGACAGAGTCTCACTCTGTTGCCCAGGCTGGACTGCAATGGCACAATCTCAGCTCACCACAACCTCCATCCACCAAGTTCAACTGATTCTCTTGCCTTAGCCTCCCAAGTAGCTAGGATTACAGGCATGTATCACCAAGCCTGGCTAACTTTGTATTTTTAGTAGAGACAGAGTTTCTCCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167232_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCCTTTGGGCAGTGCTTC
R:
AGTGACTTCTTGAATTGGGGT
Band lengths:
167-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)