HsaEX0074484 @ hg19
Exon Skipping
Gene
ENSG00000167232 | ZNF91
Description
zinc finger protein 91 [Source:HGNC Symbol;Acc:13166]
Coordinates
chr19:23521529-23525067:-
Coord C1 exon
chr19:23524972-23525067
Coord A exon
chr19:23522033-23522062
Coord C2 exon
chr19:23521529-23521856
Length
30 bp
Sequences
Splice sites
3' ss Seq
TTTATCCTTTTTTGTTACAGCTT
3' ss Score
10.64
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GCCTTGCTGTCTCTAACTCTGATCTGATATCCTGCTTTGAGCAAATAAAAGAGCCCTGGAATGTGAAGAGACATGAGACAGTAGTCAGCTTCTCAG
Seq A exon
CTTTTTAATTTAAAGTCTGTTTTATTTGAT
Seq C2 exon
ACGGAGTCTTGCTCCATCGCCAGGCTGGAGTGCAGTGGCGCGATCTCGTCCCACTGCTCACTGCAACCTCTGCCTCCCCTATTGAAGTGATTCTCCTGTCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACACACCACCACGCTCAGCTAATTTTTGTATTTTCAGAAGAGACGGGGTTTCATCATATTCACCAGGCTGGTCTTGATCTCTTGACCTCGTGATACCCTCACCTCACCCTCCCAAAGTGCTGGGACTACAGGCGTGAGCCACCGCACCCAACCAAATCTATACATTTCAATGAAGGATTTAATTTATTTATATTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167232_MULTIEX1-7/8=6-8
Average complexity
C3
Mappability confidence:
100%=91=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGAATGTGAAGAGACA
R:
CAATAGGGGAGGCAGAGGTTG
Band lengths:
128-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)