HsaEX0074553 @ hg19
Exon Skipping
Gene
ENSG00000158691 | ZSCAN12
Description
zinc finger and SCAN domain containing 12 [Source:HGNC Symbol;Acc:13172]
Coordinates
chr6:28346732-28359519:-
Coord C1 exon
chr6:28358373-28359519
Coord A exon
chr6:28353932-28354013
Coord C2 exon
chr6:28346732-28350386
Length
82 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTAATTGATTCAAGGTA
3' ss Score
6.19
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TCCATACTTACTCAGCATCAAGGAGTTCATACCGGCGCCAAGCCGTATGAGTGCAACGAGTGTGGAAAAGCCTTTGTTTATAACTCATCCCTTGTTTCCCATCAGGAAATCCACCACAAAGAAAAATGCTATCAGTGTAAGGAATGTGGGAAATCCTTCAGTCAGAGTGGCCTTATTCAGCATCAGAGAATTCACACTGGGGAAAAACCCTACAAATGTGACGTATGTGAAAAAGCCTTTATTCAAAGGACAAGTCTTACAGAACATCAGCGAATTCACACTGGAGAAAGACCCTATAAATGTGATAAGTGTGGGAAGGCGTTTACTCAAAGATCAGTCCTCACGGAACATCAGAGAATCCACACTGGAGAGAGGCCCTACAAGTGTGATGAGTGTGGGAATGCCTTCCGAGGAATCACCAGCCTCATTCAGCATCAGAGAATCCACACTGGGGAGAAGCCCTACCAATGTGATGAGTGTGGAAAAGCCTTCAGACAGAG
Seq A exon
GTAAACAAGACATTAAGTGTTTAAGGCAAAAAGCATGGAGAGGTTGGGGAAGAGCCAAGTTTCTAAAGTAATGAAAAGTGAG
Seq C2 exon
GAAGAAGACCAGCTACAAGGAAATACTTCTGAAAAATCACTCTGAACCCCAAGCTGGAGTGAATCTTCTCCTGAGCTCTCTCATTCCAGAATGGCAATCTTGTTTCAGGAGAGATCTCTAATAGTGACTGATGGTAAAGGAAGAAGGCTGTGCCTAGAACAAAGAATCAGGCTGGCAAAGAAATCACAGGTCTTTCCTCAAACTTTAAATTGCTACTCTCTGGAGATAGCTACCTGGACTTTACAGAGCTGTCAGAAGACTTGGGAAGGTTTGCCAGCATTGGAAAAAGCCACTTGGACTTCACAGAGCTGTCAGAAGACTTAGGAAGCTTTGCCAGTAGTTCCTGAGACCAGAAATACATATTATGAAGCAGGTGCTGGAACAGGCCCTGGCCCCTACTTGTGAAGCTGCAGATATAGGTAAGATAATATCATCCAGAATGTGGAGACGAGGCAATCGATGATGCTGGAAAAGTTGAAGAGAGAGTTTGAATGAAGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158691_MULTIEX1-4/4=3-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.000 C2=0.050
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF0013017=C1_1=WD(100=13.1),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF097235=Zn-ribbon_8=WD(100=11.5),PF134651=zf-H2C2_2=WD(100=6.5),PF134651=zf-H2C2_2=WD(100=6.8)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGATGAGTGTGGGAATGCC
R:
CTCCAGCTTGGGGTTCAGAGT
Band lengths:
175-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)