HsaEX0074568 @ hg19
Exon Skipping
Gene
ENSG00000166529 | ZSCAN21
Description
zinc finger and SCAN domain containing 21 [Source:HGNC Symbol;Acc:13104]
Coordinates
chr7:99655321-99662661:+
Coord C1 exon
chr7:99655321-99655513
Coord A exon
chr7:99661411-99661602
Coord C2 exon
chr7:99661706-99662661
Length
192 bp
Sequences
Splice sites
3' ss Seq
TAATCTGCTTATTGTTTCAGATT
3' ss Score
8.49
5' ss Seq
AAGGTAGAG
5' ss Score
6.38
Exon sequences
Seq C1 exon
GTCTCAACTCCTCCAAACGAACAGAAACCGGTGTGGGAGAAGATATCCTCCTCAGGAACTGCAAAGGAATCCCCGAGCAGCATGCAGCCACAGCCCTTGGAGACCAGTCACAAATACGAGTCTTGGGGGCCCCTGTACATCCAAGAGTCTGGTGAGGAGCAGGAGTTCGCTCAAGATCCAAGAAAGGTCCGAG
Seq A exon
ATTGCAGATTGAGTACCCAGCACGAGGAATCAGCAGATGAGCAGAAAGGTTCTGAAGCAGAGGGGCTCAAAGGGGATATAATTTCTGTGATTATCGCCAATAAACCTGAGGCCAGCTTAGAGAGGCAGTGCGTAAACCTTGAAAATGAAAAAGGAACAAAACCCCCTCTTCAAGAGGCAGGCTCCAAGAAAG
Seq C2 exon
GAGAACACACACTGGGGAGAAACCTTACGTGTGCACCAAGTGTGGGAAAGCTTTCAGCCACAGCTCAAACCTCACCCTCCACTACAGAACACACTTGGTGGACCGGCCCTATGACTGTAAGTGTGGAAAAGCTTTTGGGCAGAGCTCAGACCTTCTTAAACATCAGAGAATGCACACAGAAGAGGCGCCATATCAGTGCAAAGATTGTGGCAAGGCTTTCAGCGGGAAAGGCAGCCTCATTCGTCACTATCGGATCCACACTGGGGAGAAGCCTTATCAGTGTAACGAATGTGGGAAGAGCTTCAGTCAGCATGCGGGCCTCAGCTCCCACCAGAGACTCCACACCGGAGAGAAGCCATATAAGTGTAAGGAGTGTGGGAAAGCCTTCAACCACAGCTCCAACTTCAATAAACACCACAGAATCCACACCGGGGAAAAGCCCTACTGGTGTCATCACTGTGGAAAGACCTTCTGTAGCAAGTCCAATCTTTCCAAACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166529-'6-8,'6-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.935 A=0.548 C2=0.492
Domain overlap (PFAM):
C1:
PF0202312=SCAN=PD(0.1=0.0),PF034808=SBP_bac_7=PD(28.8=47.9)
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAACCGGTGTGGGAGAAGA
R:
GAGGGTGAGGTTTGAGCTGTG
Band lengths:
250-442
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)