HsaEX1000824 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr12:1800816-1807497:+
Coord C1 exon
chr12:1800816-1800923
Coord A exon
chr12:1806291-1806558
Coord C2 exon
chr12:1807130-1807497
Length
268 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGCTTCTCTTTCTAGGCC
3' ss Score
13.1
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
TCACAACTACCAGAGCAGTCCCTCTGAAGCCCCAAAGCCAGACCCAGAGGCCTGCCTGGGAGTGGGACTGAGAGCAGTGGCTCTGAGCAGAAGATGGAGATGGTCAAG
Seq A exon
GCCCCACATCGAGGGTTGCAATCTTGTCATCCATAACTCTTATAAGAATGAGCCCTGGCCTGGAAGAGAGGCCAAATGTCTAATCAGCAGGCCTGGAACACCGCCGGTGCCAAGAAAGAGCCAAGCAGCCACTCCCTGGGGCTGGCTGCAGATGAGGCCCTTGTGGTTTCCCCACTCACTGACTACGGGGAGGAGGGTGTGCAAGGACTTTGTCTGGGAAGAATCTTTGCATCTGTAGCTCAACAGGCTTCTCTCTCCAGGCCCCTGG
Seq C2 exon
GTTTCAAAAGACTGTGACTTCCACCTTGGTTTGCTCGGTCTGATGAAGGAACTTTGAGCTGTGAGCTGCACTGTGAACTTTGCTGTGAGCTGCCCTGTGATGGGAGAGGAGGCCTCCGCCTCACAGCCCTGGAGGACCTCAATGCTGCCAACGTGTGACCAGATGCAGATCCTTCTCCAGTCAAGCCTGGACATGACATGACAGCAGCCCTGGGGACCTTGATGCTGTGGCCTGTGCAAGACCCTGAGCCAGCCGCACCCAGATCCCTCACCCACAGAAACTGCCAGATTTTAAGTCTTCTGCTTGTAAGCCACTCTTTTTGCCATAGTTTGTGTGCAGCAATAGATAACTGCTCTAGAGTTGTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
Hs.666122_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCCTCTGAAGCCCCAAAG
R:
GCTGCTGTCATGTCATGTCCA
Band lengths:
300-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains