HsaEX1000948 @ hg38
Exon Skipping
Gene
NA
Description
NA
Coordinates
chr7:76551464-76622538:+
Coord C1 exon
chr7:76551464-76551522
Coord A exon
chr7:76615490-76615663
Coord C2 exon
chr7:76621116-76622538
Length
174 bp
Sequences
Splice sites
3' ss Seq
GATCTTTCTCTTCCCACAAGGCA
3' ss Score
6.05
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GTCTATCAGCCACAGTCTCTGCAAGTTTCCAAGAGCAGCAGAAAATGAACACATTGCAG
Seq A exon
GCAGCTGCTGGAGGAGGTGAAGTGGCATCGATGTCATCTTTGAAAAGTTTCTACTTTGTCCCTTAATGCCACCCTAACGTATGAGCCTCTGCTTCAGAGGTTTGCAAGCCTGGCTGCGTATTAGAGTCACCTAGGAGCTTAAGTGGCTTTTGATGCATTTCCAAGTAGAATAAG
Seq C2 exon
GTCACACCTGGGTCCTGAGCTGGCGCCATCACCGGAGACGCCAGGTGATGTCCATTCATCAGAAATAATGAGCAAAGCAGCTGTGGCTTCTAATCAGCCCATCCCTCCAGGGTGTCAGATGGAGGCCAATTAGCGGACGCACTAGACAACCAAATTCTGCCTTTCCAAGCAAAACATCAGAAAATGTTCTAGCCCTTAGCATTGATGCTGGAACCCAGTGTCTTGCTTCTGCTTGGGTTTTCATGATCTTTCCTTGCTCTGGGTGAGCTGGGGGCTGGTTCTACATCAGAACCTTCAGAGGCACTAAGAAATGCCACCTGGAGTGGAGTTAAAGAAGTTATTATTTTTTTTTAACTTCTACTATTGTCAGAGGCGGGTGAACCAGAGCAACTCCATTTTGAATAGGGGCTGGATAAAATGAGGCTGAGACCTATTGGGCTGCATTCCCAGATGGTTAAGGCATTCTAAGTCACAGGATGAGATGGGAGGTTGGCACAAGA
VastDB Features
Vast-tools module Information
Secondary ID
Hs.712837_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGAAAATGAACACATTGC
R:
GCAGAAGCAAGACACTGGGTT
Band lengths:
257-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains