HsaEX1001201 @ hg38
Exon Skipping
Gene
ENSG00000166535 | A2ML1
Description
alpha-2-macroglobulin like 1 [Source:HGNC Symbol;Acc:HGNC:23336]
Coordinates
chr12:8874971-8887001:+
Coord C1 exon
chr12:8874971-8875012
Coord A exon
chr12:8880524-8880616
Coord C2 exon
chr12:8886507-8887001
Length
93 bp
Sequences
Splice sites
3' ss Seq
GATAATGACTTGCTTTTCAGAAA
3' ss Score
6.66
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ATGAACAGGCAACAATTCAGTATTCTGATCCCTGTGAATGAG
Seq A exon
AAAGATCATTCTAGCAGTAATGTGAAGAATGGGGTGGAGAAGAAGAAAGCCGAAGTCCTTGAAACCATTTAGGAGACTGCTACAGTTATCCAG
Seq C2 exon
GTTCTTTTAAATTATCTCAGTACACAATTGTGTGGTCCATGAACAATGACAGCATAGTGGACTCTGTGGCACGGCACCCAGAACCACCCCCTTTCAAGACAGAAGCATTTATTCCTTCACTTCCTGGGAGTGTTAACAACTGATAGCTACCAGTTGTGCCCGCTCTGGACTTTTGCCCATAGTGGCCTATCCTCTGTGATTATGCATTTGTAACTGTGTTCTTCCTCTTCTGAAGACATCAGTCACATTGGATTAGCCACCCTTATGGCTGCATTTCACCTTGATTACCACTTTAAAGGCCCTGTCTCCAAATACAGTCACATTGGGGGTTATGGCTCCAACATACTCATTTGGAAGCCAGGTGTGGTGGCTCATGCCTGTAATCCCAGCACTTTCGGAGGCCAAGGCAGGAGGATTGCTTGAGCCCAGGAGCTAGAGATCAGCCTGGGCAACACAGGGAGACTCATCTCTACAAAAAAATATAAATAAATAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166535_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF076779=A2M_recep=PD(8.0=50.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGCAACAATTCAGTATTCTGA
R:
ACACTCCCAGGAAGTGAAGGA
Band lengths:
171-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains