HsaEX1001291 @ hg38
Exon Skipping
Gene
ENSG00000179869 | ABCA13
Description
ATP binding cassette subfamily A member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr7:48528236-48536467:+
Coord C1 exon
chr7:48528236-48528345
Coord A exon
chr7:48535291-48535402
Coord C2 exon
chr7:48536367-48536467
Length
112 bp
Sequences
Splice sites
3' ss Seq
TTTTACCCTTTTGTGTTTAGCCA
3' ss Score
7.26
5' ss Seq
CAGGTGGAG
5' ss Score
2.57
Exon sequences
Seq C1 exon
TGCTTTGGACTTCTAGGGGTGAATGGAGCTGGGAAGAGCACGACTTTCAAAATGCTGAATGGTGAAGTTTCTCTAACTTCAGGACATGCTATCATCAGGACTCCCATGGG
Seq A exon
CCACCCAGCAGAGCTACCAGGCTCCAGGATGGTATTGGGGAGTGTCTGCAAAGAGTCCTGTGATGTGATCCATCTTCAGGTCTTTCAGCCGTGGATACCAGCACCTGCTCAG
Seq C2 exon
GCCAGGTGCAGTGGCTCACACTTGTAATCCCAGCATTATGGGAGGCCGAGGTGGGAGGATCACCTGAGGTCAGAAGTTCAAGACCAGCCTGGCCAACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179869-'96-106,'96-105,97-106
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.2=100)
A:
PF0000522=ABC_tran=FE(32.7=100)
C2:
NA
Main Inclusion Isoform:
ENST00000435803fB8349
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTGGACTTCTAGGGGTGA
R:
CATGTTGGCCAGGCTGGTC
Band lengths:
210-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains