HsaEX1001500 @ hg38
Exon Skipping
Gene
ENSG00000159842 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr17:1125183-1229021:-
Coord C1 exon
chr17:1228793-1229021
Coord A exon
chr17:1153838-1154238
Coord C2 exon
chr17:1125183-1125367
Length
401 bp
Sequences
Splice sites
3' ss Seq
CCTGTCTCCCGATCCCCCAGGTC
3' ss Score
11.22
5' ss Seq
CAGGTTCGG
5' ss Score
6.2
Exon sequences
Seq C1 exon
CGGCCGCAGCGGGGGACCCGCGACCTGGAGCAGCGGGAGGCCGAGGCCAAGGGCCGCCCGGGCTCGCCCCTCGCCGCGGAGGAGACCCCCGGGCGCGAGCACCTGCCCCCGTGGCGGCGCCGCAGGTTCCTGCGGGTGCCCGAGCGGGACTCGCCCGGCCACAGCTCGCCGGAGAGAGACAGCGACGGCAGCCGGCACAGCTCCGACCGCGAGGACGACTTCTCCGCAG
Seq A exon
GTCCCCTGAGGCCTTAGAGATGAATCTCCCAGAAGTGGCAGCCGCGGCAGGGACACCAGGATCATGAAGGACCTGGGAGGTGAACCCGCTGCTCAGTTCCTGGCCCTCGTCCCTTAGACCCAGTCCTCGGAGCAGAACTGGGGGAAGCTGAGATTTCTGTGGGCTGCGTGCCCACCTCCTCCCTCTTCGTTGGTCCTCCCACGCGCCCGCCCCCGAGTGGGAGCAGAGCCATGTGAGCTGAGTTGGAGCTGCTCGCTGCCGAGAATTGCATCAGCCCCGCCTGGCAGGCTGGAGCGGGAGCCTGTTGCTATGGTGACCACCAGGCTTCAAACCAGTGAGAAGGATGAGATGGTTGCCGGGCGAGGTTTTCTCACCATGTGATGCGTGTGACAGGCTGACAG
Seq C2 exon
ACTTCAGCTACGGGACGGACGAGTACGACGGAGAGGGGAATGAGGAGCAGAAGGGGCCCCCGGAGGGCTCAGAGACCATGCCGTACATCGATGAGTCGCCCACCATGTCCCCGCAGCTCAGCGCCCGCAGCCAGGGCGGGGGGGATGGCGTCTCCCCGACTCCACCTGAGGGACTGGCTCCTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159842_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.932
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0062115=RhoGEF=PU(1.0=2.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENST00000302538fB69
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGGAGCAGCGGGAG
R:
CTGAGCTGCGGGGACATG
Band lengths:
329-730
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains