HsaEX1001851 @ hg38
Exon Skipping
Gene
ENSG00000236107 | AC010127.3
Description
NA
Coordinates
chr2:166251779-166294727:+
Coord C1 exon
chr2:166251779-166251912
Coord A exon
chr2:166277088-166277247
Coord C2 exon
chr2:166294565-166294727
Length
160 bp
Sequences
Splice sites
3' ss Seq
TCTATCCACTCTCCACACAGCAC
3' ss Score
8.07
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCCTCTGGCTCATCGGAATTCATAGGTTCAGCCTCTGCTTCTTCTCCTTCTCCAGGCAAAGGGTTATCAACTGTGCTGCACTCTGAGGAGCTTGACCGGTTTAATCTCTAGAAAGGAATTCACCACCCCACCAG
Seq A exon
CACGCGGAACACAATCAGGAAGGAGTGGAAGAAGTCGTTCATGTGCCACCGTGGGAGCGTACAGTCATCATTGATCTTGCAGACACATTCTTTGTAGCTCTTACCAAAGAGCTGCATGCCGACCACAGCAAAAATGAAGACGATGATGGCCAACACTAAG
Seq C2 exon
CCTTTAGACTAAAAAGAAAACAAATATTACATACCCTGAATCTGTGCTGAAACCACAAAGGAGAGCATCTTTGGATCCTTCCAAGTAATAAAAATATTCTGTTGAAGAAGAATTTGAACAGTTATAACATCACAGACTTTAATCTGTGATTGTGATAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000236107_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCTGGCTCATCGGAATTC
R:
ACTGTTCAAATTCTTCTTCAACAGA
Band lengths:
256-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains