HsaEX1002417 @ hg38
Exon Skipping
Gene
ENSG00000230124 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:HGNC:23339]
Coordinates
chr1:180272602-180274112:-
Coord C1 exon
chr1:180273937-180274112
Coord A exon
chr1:180273510-180273572
Coord C2 exon
chr1:180272602-180273398
Length
63 bp
Sequences
Splice sites
3' ss Seq
AACCTTCTTTTTTCTTAAAGAAT
3' ss Score
6.56
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GAACACACATGACCAGGAAAGATGCCCAAGGATGGCAGCTGCCTTGCAGCCAAGCATGGGTCAGACACACCAATATGGCAGCCTGATATCCAGAGGCCAACCCAGGCCAAGGAGAAAAACAAGAAACACCTGCAAAGACTAAATTCCCAGGTCCCAGAAGGATGGACAAATGTTTG
Seq A exon
AATTTCATTAAGGGGATCTAATGGAATCTTTGCCACTTGAAAGAATTTCTCTCTCCAACAGAG
Seq C2 exon
GTGTTGACTTCAACAGCCCAGATGAGATTGACTTTCCCAATCCTGCCAAGAAGCCTAAAAGGTGAGTATTAGTCCCATGAGCTGTCCCCAAGGCCTCACGGGCCCTGTGTTCTCAGAGGAGGCTGCCCTCTAGGGCTCAGCTGACCTCTGGGCTGAACTAGAGTCCTCCCAGGGCATCGTTGTCCTGGCAGGCAACTTGTTCCATCCTCTGTCCCACAAACTTCCTTTTCTATTTCCACCTGGGCCTCTGCACCAATCCCTAAATAAGGCCTCCCCAGACTAGACTTCAACACCCCATCCCTTCTGAGGCCTGCCCCCCATTCCCCTTATGAAAAAACATGGTGGGGGGAGCTCATGCTCTTTAAAGGGAGCAGGAAGATGAAGGCTCCACTCCATTGTCAAATGGCCATGAGTTAGCCTTTTCCCTATACCTGTCATCCCAAATGACCAGGGCCCTCTGCGGGAGCCACACGCTCCCTGTGGGAACGATCATGCCTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCCAGGCCAAGGAGAAAA
R:
GCTTCTTGGCAGGATTGGGAA
Band lengths:
133-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains