HsaEX1002418 @ hg38
Exon Skipping
Gene
ENSG00000230124 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:HGNC:23339]
Coordinates
chr1:180314692-180397605:-
Coord C1 exon
chr1:180397516-180397605
Coord A exon
chr1:180326411-180326562
Coord C2 exon
chr1:180314692-180314722
Length
152 bp
Sequences
Splice sites
3' ss Seq
GACTTTACCTTGTACCGTAGGTA
3' ss Score
8.02
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGTAGGGCTCTACTTCACTGGGCCTGTGATCGAGGACATAAGGAACTAGTCACAGTGTTGCTGCAACATAGAGCTGACATTAACTGTCAG
Seq A exon
GTACCAGCTCAGCCACAATGGGCTAGAACGCCAAGCGGGCTGTTGGGGTGCCTGATTCCATGCCTAGGCTCTTGGACAGCTTTGGACCAGACAAGCCTTGGATAGCCTTCTGGACTTGTCGTGGGCCAGAGGGGAGCCCACTGCCCTGAAGG
Seq C2 exon
GACAATGAAGGCCAAACAGCTCTACATTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124_MULTIEX1-10/11=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(31.2=100)
A:
NA
C2:
PF127962=Ank_2=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGGGCTCTACTTCACTGGGC
R:
TGTAGAGCTGTTTGGCCTTCA
Band lengths:
114-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains