HsaEX1002420 @ hg38
Exon Skipping
Gene
ENSG00000230124 | ACBD6
Description
acyl-CoA binding domain containing 6 [Source:HGNC Symbol;Acc:HGNC:23339]
Coordinates
chr1:180413366-180430262:-
Coord C1 exon
chr1:180430180-180430262
Coord A exon
chr1:180417757-180417923
Coord C2 exon
chr1:180413366-180413471
Length
167 bp
Sequences
Splice sites
3' ss Seq
TACATTTCTTTGCCTTTCAGATC
3' ss Score
11.12
5' ss Seq
TTGGTGAAT
5' ss Score
1.76
Exon sequences
Seq C1 exon
ATACCAGAGAAGAAAGGAAAAGAAGCAAATACAGGTTTTGGTGGGCCAGTTATTAGTTCTCTATATCATGAAGAAACCATCAG
Seq A exon
ATCAACAACTTCTGGCCATACATCCAACAAGTAAATCAGGAACTTAAATTCCTACAAAGAAGTAATATTCACTAGCAGTATGACTGAATTTTGGAAGATAGTGTGCAGTGCCAGCTTTTATCCTAGAAAGACTACCTCCAAAGGAACTTCACAGAGTGGCATTTTTG
Seq C2 exon
GGAAGAAGACAAAAATATATTTGATTACTGCAGGGAAAACAACATTGACCATATAACCAAAGCCATCAAATCGAAAAATGTGGATGTGAATGTGAAAGATGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000230124_MULTIEX1-5/11=3-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.337 A=1.000 C2=0.017
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127962=Ank_2=PU(30.1=77.8)
Main Inclusion Isoform:
ENST00000367595fB8538
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAGAAGAAAGGAAAAGAAGCA
R:
TCTTCATCTTTCACATTCACATCCAC
Band lengths:
186-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains