HsaEX1003142 @ hg38
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr2:177523748-177543836:+
Coord C1 exon
chr2:177523748-177523805
Coord A exon
chr2:177524728-177524871
Coord C2 exon
chr2:177538074-177543836
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTTCCTACTGCAAAGTGA
3' ss Score
3.29
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCAGCTGCTAGAGAAGAAATCCTTGCTAATGGAGGGAGCCTGTCACATCACCATGGAG
Seq A exon
TGAGAATCCATGAGGACAGGAATTCTAGTTTTGTTTGTTGCTATATGGTAGCACCTAGAACAGTGCTTAGCCCCAGTCAGCCCTCCATACATTGATGCAGAATGAATGAAAGAATTCTGTTGGAAAAGGAGTGGACTATGGAAG
Seq C2 exon
TGGGCAAGTTACGGAAGCAATGGCTAAAGGAAAGTATCTCTGATGTCGGCTTTGGGATGCTGAAGTCTGTCAAGGAATATGTGGACCCCAATAACATCTTTGGAAACAGAAACCTTTTATAAATCCATTAGTACCATTACAAAAAAATGTCAATTTTTTTTTTAAGTTTTCAACTGTGGTTATACTAGTAATCAAATATATCATGGACTATATTTTGGATACATTTGTTTCTTTGGTTTAAAATAAGTTTGTTTTCATTCTGTAGTTTGTTTTGTTTCTACATCTATGGATTGACAGATAGTATTCCTAAATCTCTCTCATTGTAGGTACATCATTTTACATTCAGCGGTTGTCATTTCAAATTTTAGTCAGGCAGCACAAAGCTGTCAATTATTCCAGAGGAAGCTGCTGCCAGCTGTTTTGTATTGTTGCTTCCTCTTGGGGAACAAAGACAGATTTGGTATCATTGATTGCTCAGCTAGCCTCTTTTTAAAAGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.032 C2=0.006
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=FE(26.0=100)
A:
PF0291314=FAD-oxidase_C=PD(2.1=15.6)
C2:
PF0291314=FAD-oxidase_C=PD(13.9=92.7)
Main Inclusion Isoform:
ENST00000264167fB8986
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTCACATCACCATGGAG
R:
TCTGTCAATCCATAGATGTAGAAACA
Band lengths:
319-463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains