HsaEX1003143 @ hg38
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr2:177461893-177468524:+
Coord C1 exon
chr2:177461893-177462018
Coord A exon
chr2:177464721-177464879
Coord C2 exon
chr2:177468416-177468524
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATTACACTTTCTTGTGCTAGTGT
3' ss Score
6.47
5' ss Seq
AAAGTAAAG
5' ss Score
1.6
Exon sequences
Seq C1 exon
CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCAGATTCCCTGGAGTTCAGTACTGTAGGAGGATGGGTATCTACTCGCGCATCAGGCATGAAGAAGAATATCTATGGCAATATCGAGGACCTG
Seq A exon
TGTTACAGAGCTGAAGCTCATCGCTATTAGCGGTAATCCACTGCTTCTATGAAAGGAGCCTTGCTACATTCTTCAGTTATGAAGCACTGTTAGAAGGAAAAACATTGAACTCTGTAGTGACAAAACCAAACTAAAAATTCTGGATCTTCACAAAAGAAA
Seq C2 exon
GTGGTTCATATAAAAATGGTAACACCTAGAGGTATAATAGAAAAAAGCTGTCAAGGACCTCGTATGTCAACAGGCCCTGATATCCATCACTTCATCATGGGATCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-10/19=9-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=0.000 C2=0.162
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(28.7=100)
A:
PF0156518=FAD_binding_4=PD(4.5=60.0)
C2:
PF0156518=FAD_binding_4=PD(10.5=40.5)
Main Inclusion Isoform:
ENST00000264167fB8987
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAAGAAAGTGGTTATTGTACAGGT
R:
CTTCAGATCCCATGATGAAGTGA
Band lengths:
234-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains