HsaEX1003144 @ hg38
Exon Skipping
Gene
ENSG00000018510 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr2:177420269-177434417:+
Coord C1 exon
chr2:177420269-177420358
Coord A exon
chr2:177432986-177433124
Coord C2 exon
chr2:177434327-177434417
Length
139 bp
Sequences
Splice sites
3' ss Seq
ACTTCTCTCCCTTCCCCCAGGGC
3' ss Score
13.19
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GCAAGAAGTTATGAAATGGAATGGATGGGGATATAATGATTCTAAATTCATCTTCAATAAGAAGGGCCAAATTGAATTGACTGGGAAAAG
Seq A exon
GGCATTAATCTATTCATAAAGATATACGTCCATGACCCAACCACCTCCCACTAGGGGATCAAATTTCAACATGAGGTCTGGAGGGTTTGGTGTCCAAACTACAGGACTCCTTTAAGAGAGTGAAAGGATAAATCACAGA
Seq C2 exon
GTACCCTCTTAGTGGCATGGGTTTACCAACATTTAAAGAATGGATCCAAAATACCCTTGGAGTAAATGTGGAGCATAAAACTACCTCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000018510_MULTIEX1-2/19=1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
PF0291314=FAD-oxidase_C=PU(1.4=3.2)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000264167fB8988
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGAAGTTATGAAATGGAATGGA
R:
AGAGGTAGTTTTATGCTCCACAT
Band lengths:
178-317
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains