HsaEX1003236 @ hg38
Exon Skipping
Gene
ENSG00000154027 | AK5
Description
adenylate kinase 5 [Source:HGNC Symbol;Acc:HGNC:365]
Coordinates
chr1:77532107-77536038:+
Coord C1 exon
chr1:77532107-77532340
Coord A exon
chr1:77534571-77534672
Coord C2 exon
chr1:77535847-77536038
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATTTTATTTCATCCTCACAGCAA
3' ss Score
8.17
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
CTCCACACCTCCCTGCAAGCTAAGGAAGCCGGCTCCGGCCTTGGGCAGCCCAGAAAGGGGCTCCCACAGTGCAGCGGCGGGCTGAAGGGCTCCTCAAGCGCGGCCAGAGTGGGCGCCAAGGCGGAGGAGGCGCTGACATCGAGCGGGGGCTGTGAGGGCTGCCAGCATGCTGTCACCTCTCAGTCCCACTAGATCCCAAGAGGCAGCAGAGGCAGCTTCTGAAAAATAAAATAA
Seq A exon
CAATCCTATGATCATCCTCATTGTATGAATGAGAAGACTCAGATGCAGAGAAGTTGAGTCAGACTTCTAGTTAATGAGGAAGTCAGTTTAAATGAACAATAT
Seq C2 exon
ATTGGAGACCCACAGTTGGTGATCTGTATGGACTGCTCGGCAGACACCATGACCAACCGCCTTCTCCAAAGGAGCCGGAGCAGCCTGCCTGTGGACGACACCACCAAGACCATCGCCAAGCGCCTAGAAGCCTACTACCGAGCGTCCATCCCCGTGATCGCCTACTACGAGACAAAAACACAGCTACACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000154027-'32-38,'32-37,33-38
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.055
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040617=ADK=PD(38.2=93.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATGCTGTCACCTCTCAGTC
R:
TCTCGTAGTAGGCGATCACGG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains