HsaEX1003654 @ hg38
Exon Skipping
Gene
ENSG00000145362 | ANK2
Description
ankyrin 2 [Source:HGNC Symbol;Acc:HGNC:493]
Coordinates
chr4:113242111-113249862:+
Coord C1 exon
chr4:113242111-113242209
Coord A exon
chr4:113243503-113243538
Coord C2 exon
chr4:113249764-113249862
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTCTAAAACTTTTGGTCCAGAGT
3' ss Score
3.16
5' ss Seq
GAGGTTTGC
5' ss Score
3.52
Exon sequences
Seq C1 exon
AATGGAATCACTCCTCTGCATGTGGCTTCCAAAAGAGGAAATACAAACATGGTGAAGCTCTTACTGGATCGAGGCGGTCAGATCGATGCCAAAACTAGG
Seq A exon
AGTGGCTACATCACAACACGTGGGAGTTCTGGAGAG
Seq C2 exon
GATGGGTTGACACCACTTCACTGTGCTGCACGAAGTGGGCATGACCAAGTGGTGGAACTTCTGTTGGAACGGGGTGCCCCCTTGCTGGCAAGGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145362_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.667 C2=0.041
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(30.7=93.9),PF127962=Ank_2=PU(1.3=3.0)
A:
PF127962=Ank_2=FE(13.9=100)
C2:
PF127962=Ank_2=PD(33.3=93.9)
Main Inclusion Isoform:
ENST00000506722fB9301
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTACTGGATCGAGGCGGTC
R:
CCCCGTTCCAACAGAAGTTCC
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains