HsaEX1003669 @ hg38
Exon Skipping
Gene
ENSG00000151150 | ANK3
Description
ankyrin 3 [Source:HGNC Symbol;Acc:HGNC:494]
Coordinates
chr10:60234688-60261957:-
Coord C1 exon
chr10:60261859-60261957
Coord A exon
chr10:60236094-60236163
Coord C2 exon
chr10:60234688-60234786
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTAAACTCCTTCAGAAA
3' ss Score
7.74
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGTGGCTTCACTCCGCTCCACATAGCTGCTCACTATGGAAATATCAATGTAGCCACGTTGCTGTTAAACCGAGCGGCTGCTGTGGATTTCACCGCAAGG
Seq A exon
AAAGAAAAAAAAACAGTAGGGAGCATAAAAGAAATAATATTGGCTAAAGGTTGATGTTTACTGAACCAGG
Seq C2 exon
AATGACATCACTCCTTTACATGTTGCATCAAAAAGAGGAAATGCAAATATGGTAAAACTATTGCTCGATCGAGGAGCTAAAATCGATGCCAAAACCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000151150_MULTIEX3-5/14=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.004
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(43.2=100),PF127962=Ank_2=PU(9.6=21.2)
A:
NO
C2:
PF127962=Ank_2=PD(0.1=0.0),PF127962=Ank_2=FE(43.8=100)
Main Inclusion Isoform:
ENST00000280772fB9310
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTCCGCTCCACATAGCT
R:
GGCATCGATTTTAGCTCCTCGA
Band lengths:
183-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains