HsaEX1003799 @ hg38
Exon Skipping
Gene
ENSG00000148513 | ANKRD30A
Description
ankyrin repeat domain 30A [Source:HGNC Symbol;Acc:HGNC:17234]
Coordinates
chr10:37231461-37235891:+
Coord C1 exon
chr10:37231461-37231680
Coord A exon
chr10:37232499-37232567
Coord C2 exon
chr10:37235791-37235891
Length
69 bp
Sequences
Splice sites
3' ss Seq
ATTATCTTCTTTCTACCCAGAAT
3' ss Score
8.22
5' ss Seq
CAGGTGATT
5' ss Score
5.95
Exon sequences
Seq C1 exon
AACTCATGAGAGACAAGCAGTAAGAAACTTCTTTTGGAGAAACAACAGACCAGATCTTTACTCACAACTCATGCTAGGAGGCCAGTCCTAGCATCACCTTATGTTGAAAATCTTACCAATAGTCTGTGTCAACAGAATACTTATTTTAGAAGAAAAATTCATGATTTCTTCCTGAAGCCTACAGACATAAAATAACAGTGTGAAGAATTACTTGTTCACG
Seq A exon
AATTGCATAAAGCTGCACAGGATTCCCATCTACCCTGATGATGCAGCAGACATCATTCAATCCAACCAG
Seq C2 exon
GCAGAATCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAACTCTGCCTCCCAGGTTCACGCCATTCTCCTGCCACAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148513-'57-53,'57-52,58-53
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATGCTAGGAGGCCAGT
R:
AGTGACAGAGCGAGATTCTGC
Band lengths:
176-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains