HsaEX1003848 @ hg38
Exon Skipping
Gene
ENSG00000174501 | ANKRD36C
Description
ankyrin repeat domain 36C [Source:HGNC Symbol;Acc:HGNC:32946]
Coordinates
chr2:95859861-95867581:-
Coord C1 exon
chr2:95867440-95867581
Coord A exon
chr2:95861104-95861110
Coord C2 exon
chr2:95859861-95860074
Length
7 bp
Sequences
Splice sites
3' ss Seq
CTTTCCATTCTTGCTTTTAGATT
3' ss Score
10.47
5' ss Seq
GGGGTAATT
5' ss Score
5.8
Exon sequences
Seq C1 exon
GTGAAAAACCAAATACATTCTAGGGATGACCTTGATGACATAATTCAGTCATCTCAAACAGTCTCAGAGGACGGTGACTCGCTTTGCTGTAATTGTAAGAATGTCATATTACTCATTGATCAACATGAAATGAAGTGTAAAG
Seq A exon
ATTTGGG
Seq C2 exon
ATTGTGTTCACCTATTGAAAATTAAAAAGACATTTTGTTTATGTAAAAGATTAACAGAACTTAAAGATAATCACTGTGAGCAACTTAGAGTAAAAATTCGAAAACTGAAAAATAAGGCTAGTGTACTACAAAAGAGACTATCTGAAAAAGAAGAAATAAAATCGCAGTTAAAGCATGAAACACTTGAATTGGAAAAAGAACTCTGTAGTTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174501-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.292 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000456556fB9397
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTGATCAACATGAAATGAAGTGT
R:
GTTGCTCACAGTGATTATCTTTAAGT
Band lengths:
114-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains