HsaEX1004500 @ hg38
Exon Skipping
Gene
ENSG00000137962 | ARHGAP29
Description
Rho GTPase activating protein 29 [Source:HGNC Symbol;Acc:HGNC:30207]
Coordinates
chr1:94154551-94177720:-
Coord C1 exon
chr1:94177612-94177720
Coord A exon
chr1:94174604-94174749
Coord C2 exon
chr1:94154551-94154648
Length
146 bp
Sequences
Splice sites
3' ss Seq
TAGATTTCTTTCATTTTCAGACA
3' ss Score
8.33
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GATATCCATACTTCAGAGAGTGAAAGCAAAATTTTTGAACGAGCTACATCATTTGAGGAATCAGAACGCAAGCAAAATGCGTTAGGAAAATGTGATGCATGTCTCAGTG
Seq A exon
ACAAAGCACAGTTGCTTCTAGACCAAGAGGCTGAATCAGCATCCCAAAAGATAGAAGATGGTAAAACCCCTAAGCCACTTTCTCTGAAATCTGATAGGTCAACAAACAATGTGGAGAGGCATACTCCAAGGACCAAGATTAGACCT
Seq C2 exon
GAGACTTTAATACAAAATTACCGTGTACTTCATCTACAATATGTCTTCTGCTGCTGATCTAGATCTGAGCTGTCCGATACAGCTGCCAGAAGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137962_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.807 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCCATACTTCAGAGAGTGAAAGCA
R:
TGGCTTCTGGCAGCTGTATCG
Band lengths:
202-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains