HsaEX1004962 @ hg38
Exon Skipping
Gene
ENSG00000170653 | ATF7
Description
activating transcription factor 7 [Source:HGNC Symbol;Acc:HGNC:792]
Coordinates
chr12:53600953-53626407:-
Coord C1 exon
chr12:53626279-53626407
Coord A exon
chr12:53624646-53624699
Coord C2 exon
chr12:53600953-53601021
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCTATGTCATAATATCTTAGGCC
3' ss Score
5.02
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
TCGCGAGAGTTGAGCGCGCCTGGCCGGACGGGAGGAAAGTATCCGTTCCGCCAAGGGGGGAAAGGAGGAGCTGGAGACAGATTGTAGGACCGAGCGCGGGCAGGCGGGAGGCAACGGAGCTACCAGCCG
Seq A exon
GCCAAGGGCTGGGGAAATCAAACACAATTTGTACTTACACATGGAAGTTGTAAG
Seq C2 exon
CTCCTCTCTGCTATATGAAATATGGGAGACGACAGACCGTTTGTGTGCAATGCCCCGGGCTGTGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000170653_MULTIEX2-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.080
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009621=zf-C2H2=PU(36.0=56.2)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGTATCCGTTCCGCCAAGG
R:
GCATTGCACACAAACGGTCTG
Band lengths:
147-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains