HsaEX1005210 @ hg38
Exon Skipping
Gene
ENSG00000132932 | ATP8A2
Description
ATPase phospholipid transporting 8A2 [Source:HGNC Symbol;Acc:HGNC:13533]
Coordinates
chr13:25468977-25530098:+
Coord C1 exon
chr13:25468977-25469121
Coord A exon
chr13:25470762-25470930
Coord C2 exon
chr13:25529999-25530098
Length
169 bp
Sequences
Splice sites
3' ss Seq
GATGAAGTATATCCATACAGTGC
3' ss Score
0.71
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
GACCTGTTCGTTCTTCTTTGGGCTATAAGAAGGCAGAGGATGAGATGTCCCGGGCCACGTCTGTTGGAGACCAGCTGGAGGCACCCGCCCGCACCATTTACCTCAACCAACCGCATCTCAACAAATTCCGCGACAACCAGATCAG
Seq A exon
TGCAATATTATTGGGCCATAAAAAGGAATGAAATATTGACACATTCTACAACATGGATGAGACTTGAAAGCATTATGCTAAGTGGAAGAAGCCAGTCACAAAAGGCCTCATAGTACATGATTCCATTTATATGAAGTATCCAGAAGAGGCAAATTTATAGAGTTATGAG
Seq C2 exon
TACGGCCAAGTACAGCGTGTTGACATTTCTACCTCGATTCTTGTATGAGCAGATTAGAAGAGCTGCTAATGCCTTCTTTCTCTTCATTGCCTTATTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000132932_MULTIEX2-2/3=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000381655fB10222
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTTCGTTCTTCTTTGGGCT
R:
CTGTAATAAGGCAATGAAGAGAAAGA
Band lengths:
243-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains