HsaEX1006122 @ hg38
Exon Skipping
Gene
ENSG00000261652 | C15orf65
Description
chromosome 15 open reading frame 65 [Source:HGNC Symbol;Acc:HGNC:44654]
Coordinates
chr15:55408548-55418712:+
Coord C1 exon
chr15:55408548-55408786
Coord A exon
chr15:55417698-55417759
Coord C2 exon
chr15:55418223-55418712
Length
62 bp
Sequences
Splice sites
3' ss Seq
CAACTTTGCTCTGTGTACAGGTG
3' ss Score
8.12
5' ss Seq
TGTGTGAGC
5' ss Score
2.62
Exon sequences
Seq C1 exon
GTTGCAACCTCCAGAAAGAATTCGTGGTTTCACCCGGGAAAACAGCTCCCCGGATTAAACGGATAGGTTTACACATACTGATCCACCCAGCTATTCATCTTCTGTTTGCTGCTTTAATTGGGTGCGGTTAAAAGGCCACGTCCCTAGGCGTTCACCGGCTTTCTTGCCATCTGCTGCATGAAAACTGACTTTGCCGAAAAAATTAACAAAGAAGAGCGAAAATGACAGACCGCAACCGG
Seq A exon
GTGTATGTGATTTTAAGGGTAGTCTTCAACGTCAAGAGAAGAGACCACCAAACAGGCTTTGT
Seq C2 exon
GATAAGAAAAGTACTTCACCTTCAAATTCAGACACAGAAATGAAATCTGAACAACTGCCTCCTTGTGTGAACCCTGGCAATCCTGTGTTTTCATGTATGTTGGATCCAAAGACACTCCAGACAGCCACCTCACTATCAAAACCTCAAATGATTATGTATAAAACCAATTCAAGTCATTATGGTGAATTTCTACCTATTCCACAGTTTTTCCCCTGCAATTATACTCCAAAGGAGCAAGTATTTTCAAGCCATATCAGAGCAACTGGATTTTATCAAAATAACACTCTAAATACTGCACCTGACAGAACCAGAACTCTTGATTTTCCTAATATTCAACACACTCTATGAAAATATATTCCTTTGTATATTGAAGAGAAAATATACTCGGGAAAAATGAGTGTTAAATCTAAGGGTAGAATACCTAATAAAGAAGATAAAAAGTTTTGAATCAATTTTTAAAATAAGTTAAATAAAGTATTTCAACTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000261652_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.388
Domain overlap (PFAM):
C1:
PF148921=DUF4490=PU(2.8=50.0)
A:
NA
C2:
PF148921=DUF4490=PD(95.4=88.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATGACAGACCGCAACCG
R:
GGCTGTCTGGAGTGTCTTTGG
Band lengths:
148-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains