HsaEX1006626 @ hg38
Exon Skipping
Gene
ENSG00000179058 | C9orf50
Description
chromosome 9 open reading frame 50 [Source:HGNC Symbol;Acc:HGNC:23677]
Coordinates
chr9:129613435-129615647:-
Coord C1 exon
chr9:129615484-129615647
Coord A exon
chr9:129613875-129614069
Coord C2 exon
chr9:129613435-129613597
Length
195 bp
Sequences
Splice sites
3' ss Seq
TATCATGGTGTCCCGGGCAGCAG
3' ss Score
5.48
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
CAGGCCCCACGGTGCACAGGTCCCCAGGCTCAAGGCTGCGCTGACCCACAACCCCTCGGGGGAAGGCTCTAGGCCCTGCAGGCAGCGTTGCCCTTTCCGGGTGCGATTCGCTGACGAGACCCTGCAGGACACAACGCTCCGCTACTGGGAGCGCAGACGCTCAG
Seq A exon
CAGGGTGCCCAGGAGACGTGGGGGCCAGCCTGCTGCTTCCCAGCCCTTTCCATCCTGGGGCAGCCATTGGGGAACTCAGGGTCCTTGGACCACCTCGCATGGCTGCTGTTGGACAGGAAGAGCCCCCATCCCTGAGACAGCCCTCCCTGAAGCCCTCAACGCTCTCAGCATGGTTTCTGGGATTTCTATGATGGG
Seq C2 exon
TCCAACAGAGCGTCATTGTGAACCAGAAGGCCGCCCTGCCAGTGGCGTCCGAGCGGGTGTTTGGGAGTGTCGGAAAACGGCTGGAGAGTTTGCCCAAAGCCCTGTACCCTGGGGCCAAGGAGGAGACCCTGGCCAGCTCCTCGTGTTGGGACTGCGCTGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179058_MULTIEX1-1/2=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.413 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGGTCCCCAGGCTCAAG
R:
GTACAGGGCTTTGGGCAAACT
Band lengths:
256-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains