HsaEX1006926 @ hg38
Exon Skipping
Gene
ENSG00000137225 | CAPN11
Description
calpain 11 [Source:HGNC Symbol;Acc:HGNC:1478]
Coordinates
chr6:44166758-44169531:+
Coord C1 exon
chr6:44166758-44166829
Coord A exon
chr6:44168942-44169031
Coord C2 exon
chr6:44169281-44169531
Length
90 bp
Sequences
Splice sites
3' ss Seq
ATTTATTTATTTTTTTTTAGAGA
3' ss Score
8.33
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GGCCGAGTCTTCCGGAGTCAGCAGAGAGCCTGGATGGATCACAGGAGGATAAGCCTCGGGGCTCATGTGCGG
Seq A exon
AGACAAGGTCTTGCTCTGTCACCCAGACTGGAGTGCCATCACATCTCATTGCAGCCTCAAACTGCCACAGCCTCGAACTCCAGGGCTCAG
Seq C2 exon
AGCCCACTTTTACTGATACGGGAATGGTGGCTCACATAAACAACAGCCGGCTCAAGGCCAAGGGCGTGGGCCAGCACGACAACGCCCAGAACTTTGGTAACCAGAGCTTTGAGGAGCTGCGAGCAGCCTGTCTAAGAAAGGGGGAGCTCTTCGAGGACCCCTTATTCCCTGCTGAACCCAGCTCACTGGGCTTCAAGGACCTGGGCCCCAACTCCAAAAATGTGCAGAACATCTCCTGGCAGCGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137225_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.323 C2=0.274
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064816=Peptidase_C2=PU(11.3=40.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCGGAGTCAGCAGAGAG
R:
GGTTACCAAAGTTCTGGGCGT
Band lengths:
167-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains