HsaEX1007314 @ hg38
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:158220595-158250912:-
Coord C1 exon
chr2:158250772-158250912
Coord A exon
chr2:158226326-158226483
Coord C2 exon
chr2:158220595-158220713
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTGTGTCTCTGGCAGGCT
3' ss Score
9.51
5' ss Seq
TTGGTTGGT
5' ss Score
2.01
Exon sequences
Seq C1 exon
GTTCGTCAATGGCGAGCCCACCAAGAAGAGGTAGCAAGACTGGAAATGGAAATTTCTGCCAGAAGAAGAGAAAAGGAAGAGGAGAAAGAGAAACTGTGGAAGAAGAAGGAATTGTTGCAAAGAGCAGAGAAGAAAAAAAAA
Seq A exon
GCTTTGGAATCAGGATGATGCTGGCCTCATAAAATGAGTTAGGGAGGATTCCCTCTTTTTCTATTGATTGGAATAGTTTCAGAAAGAATGGTACCGGCTCCTCCTTATACCTCTGATAGAATATGGCTGTGAATCCATCTGGTCCTGGACTTTTTTTG
Seq C2 exon
ATAAAAAAATACTGGGCCAAGAAAAAACAGAAGTGGCAAGAAATGGAAATGAGAGATCTTCAGCGTCTAGAAGAACTGAAGAAATTAATCGCTGAACAGTCACTAAAAGACAGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.800 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000409187fB11489
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGCCCACCAAGAAGAGGTA
R:
CTGTCTTTTAGTGACTGTTCAGCG
Band lengths:
242-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains