HsaEX1007318 @ hg38
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:158250772-158309639:-
Coord C1 exon
chr2:158309433-158309639
Coord A exon
chr2:158251857-158251895
Coord C2 exon
chr2:158250772-158250912
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATAATTTTTTTAAATCCCAGGAA
3' ss Score
6.49
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GTTGAACACGAGAAATATTGTGACCAATATCGCTTTGCTATAGAGCAGCAAAATATCCTGATATCAAATTGGAATAAAAATAAGAAAGACTTTATACAGAAGGCTGTGCTGACACTCACTGAGGCTTGTGCAACACATGAAATGGAGAGCATGTTGGCTAAGGACAAGAAAAAGCAACAGGAATTGTGTGCTGATCTGAAAGCCAAG
Seq A exon
GAAGTGATTCTATTCAGAGATAACCAATATCATTATTTG
Seq C2 exon
GTTCGTCAATGGCGAGCCCACCAAGAAGAGGTAGCAAGACTGGAAATGGAAATTTCTGCCAGAAGAAGAGAAAAGGAAGAGGAGAAAGAGAAACTGTGGAAGAAGAAGGAATTGTTGCAAAGAGCAGAGAAGAAAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237_MULTIEX1-18/18=15-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000409187fB11493
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTGAGGCTTGTGCAACA
R:
TACCTCTTCTTGGTGGGCTCG
Band lengths:
126-165
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains