HsaEX1007322 @ hg38
Exon Skipping
Gene
ENSG00000153237 | CCDC148
Description
coiled-coil domain containing 148 [Source:HGNC Symbol;Acc:HGNC:25191]
Coordinates
chr2:158340598-158345318:-
Coord C1 exon
chr2:158345215-158345318
Coord A exon
chr2:158343042-158343249
Coord C2 exon
chr2:158340598-158340680
Length
208 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTCCTTTTTCTACAGGAT
3' ss Score
11.42
5' ss Seq
ATCGTGAGA
5' ss Score
3.36
Exon sequences
Seq C1 exon
ATCAGAAAAGCAATGTTGACTTCAAAGTTATCCAAAGAACAAACACTAATAAAACAACACAAGCAAGTGTGGTGGCAGGAATACCAGAGGCTGAATGAAGTCAG
Seq A exon
GATTCTGTTTACATCACCTGAGATGCAATTGGTCTAGCCTTGCTGGCAAAAATAAAAGAAATTTTGCCAGGGTGTGGTGGTGCATACCAGTAGTCCCAGCTACGTGGGAGGCTGAGGCAGGAGGATCACTTCAGCCTAGGCGTTCAAGTCTTCAGTACATTATGATTGCACCCGTGAACAGCCACTGCACTCTAGCCTGGGCAACATC
Seq C2 exon
ATGTAAAATGGAATCTGAAATAAAATCCCTTCTCAATGAAGAGAACATTGGAAATGAATGTCTTTGTGACCTTACAAATTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153237-'14-13,'14-12,15-13
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.067 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000409187fB11497
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAAAAGCAATGTTGACTTCA
R:
GTCACAAAGACATTCATTTCCAATGT
Band lengths:
173-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains