HsaEX1007396 @ hg38
Exon Skipping
Gene
ENSG00000260220 | CCDC187
Description
coiled-coil domain containing 187 [Source:HGNC Symbol;Acc:HGNC:30942]
Coordinates
chr9:136265956-136267511:-
Coord C1 exon
chr9:136267384-136267511
Coord A exon
chr9:136266458-136266595
Coord C2 exon
chr9:136265956-136266043
Length
138 bp
Sequences
Splice sites
3' ss Seq
CCGGATCTCCGGGCCTCTAGGTT
3' ss Score
6.17
5' ss Seq
AAGGTGATT
5' ss Score
5.88
Exon sequences
Seq C1 exon
ATGCTGGAGCGGAGCCTGCGGGAGGAGGAGCTGCGAGCACAGCACCAGGCCGCGCTGCTGCGCCTGCGAGAGATGGCGCTCCAGGAGAAAACGCTCGCGGAGCTGGCCTGGCTGGAGCATCGACGAGG
Seq A exon
GTTGTCTCCAACGTTTTGCCATTATTAATGAAGATAGAGAGATCATTTCCTTAAGGTAAAACCTTAGAAATGGAATGACCGGGTCAGTGAGAATGCATCTGGAAGCCGCTTGATACTGCCACATTGGTCTCCAGAAAG
Seq C2 exon
GTGCCTGGACAGCAAGAGGGACAGAGCTGTGCTGGCCGCGCTGGTTGAGAAGCAGCAGCAAGCCCTCAGCAGATTGGAGAAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000260220_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000638797fB11539
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGGGAGGAGGAGCTG
R:
TTCTCCAATCTGCTGAGGGCT
Band lengths:
194-332
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains