HsaEX1007736 @ hg38
Exon Skipping
Gene
ENSG00000196352 | CD55
Description
CD55 molecule (Cromer blood group) [Source:HGNC Symbol;Acc:HGNC:2665]
Coordinates
chr1:207367370-207373252:+
Coord C1 exon
chr1:207367370-207367487
Coord A exon
chr1:207370709-207370834
Coord C2 exon
chr1:207372769-207373252
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTGGTCTCGCTGACTTCAGGAT
3' ss Score
8.15
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AGTCTTACTCTGTCACCCAGGCAGGAGTGTGGTGGTGTGATCTTCGCTCACTGCAACCTCTGCCTCCTGAGTTCAAGCAATTCTCCTGCCTCAGCCTTCGGAGTAGCTGGGATTACAG
Seq A exon
GATTGAAGCTGCAGACCTTCACAGTGAGTGTTACAGCTCTTAAAGGCGGCGCGTCTGGAGTTGTTTGTTCCCTTCAGTGGGTTCGTGGTCTCGCTGGCCTCAGGAATGAAGCTGCAGACCTTCGTG
Seq C2 exon
AATTATAACTGGACATCTTTTGCCAGGTGACTTTTCAGTGCCTTCCACTATAGTAGATGGAATATACTTCCCCACTCCATTGAGTCCATTTTTTGTTGGCTAACCTGTAGTTTTAAGATTGTAATTTTTTTAAATCTAGTTACCTTGATTGCTTTTTAGAGAGCTATTAGTCCCAATAACTTAGACCACCATTATTTAAAAATGGAATTCCTAACCACAATGTGTGCACCTCATCATAGGAAGGAACACAAATGGGGGAGTAGAAGAAAACAGAAATGTATTAATAGGCGACAGTGAGTACTTCAGCTTTATGTGTAATGTTTTATTTCTTGTATTACAAAGTAAAAGATATGAAGCATTTGACTAAAAATGTTAATTTATATAATTTGAATGATGGGTACATGGGCAGTTGTTATATTTATATATACTTTTATGTATTCTAAATTTTTTTCTCAAAATAAAAAAGAGAAACAGTCAAGGGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000196352-'35-51,'35-50,36-51
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCTGCCTCCTGAGTTCAA
R:
TGGTGGTCTAAGTTATTGGGACT
Band lengths:
254-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains