HsaEX1008536 @ hg38
Exon Skipping
Gene
ENSG00000116785 | CFHR3
Description
complement factor H related 3 [Source:HGNC Symbol;Acc:HGNC:16980]
Coordinates
chr1:196774795-196779356:+
Coord C1 exon
chr1:196774795-196774944
Coord A exon
chr1:196779080-196779082
Coord C2 exon
chr1:196779162-196779356
Length
3 bp
Sequences
Splice sites
3' ss Seq
CACAAGAAAATGTTTGAGAGAAG
3' ss Score
-8.71
5' ss Seq
AAGGTGATA
5' ss Score
4.18
Exon sequences
Seq C1 exon
GAACCACACTTGGTAACTAATAATGAAAGATTTCAAACCCCAAACAGTGCAACTGAAACTTTTGTATTAGCATACTACTGAGAATATCTAACATGTTGTTACTAATCAATGTCATTCTGACCTTGTGGGTTTCCTGTGCTAATGGACAAG
Seq A exon
AAG
Seq C2 exon
TGAAACCTTGTGATTTTCCAGACATTAAACATGGAGGTCTATTTCATGAGAATATGCGTAGACCATACTTTCCAGTAGCTGTAGGAAAATATTACTCCTATTACTGTGATGAACATTTTGAGACTCCTTCAGGAAGTTACTGGGATTACATTCATTGCACACAAAATGGGTGGTCACCAGCAGTACCATGTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116785-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0008415=Sushi=PU(95.4=93.9),PF0008415=Sushi=PU(1.8=1.5)
Main Inclusion Isoform:
ENST00000367425fB12269
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTGGGTTTCCTGTGCTA
R:
ACTGGAAAGTATGGTCTACGCA
Band lengths:
106-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains