HsaEX1008829 @ hg38
Exon Skipping
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128199920-128204383:-
Coord C1 exon
chr9:128204186-128204383
Coord A exon
chr9:128202764-128202936
Coord C2 exon
chr9:128199920-128200184
Length
173 bp
Sequences
Splice sites
3' ss Seq
CTTCTGCCTTTGGTCCTCAGTTT
3' ss Score
8.35
5' ss Seq
TAAGTAAGC
5' ss Score
5.66
Exon sequences
Seq C1 exon
AACACGATTCCTCTGGCCAGGCCAAGGGGAGGGCGACACTGACAGGCGCCCCCCACCCAGGGGCCGTGGCGAAGCAAGGGGCCGGCTGCTCAGAAAAGGATAAGAAGTGGTTTCTCCTCCCCTCTTCCCTTCCTCATCCTGCAGCCCGCGCCTCCCCCCTCGCCGCGCTGCGCACGGATGGCGGCGGGAGCCGCAGAG
Seq A exon
TTTCCTTGTTTCTAGAAGGAGAAAGTTGGAACATGAATTCAACAAATATTTACTAGGTACCTGCTAGAAGCCAGGCCCTGTCCTAGGCACTGAAGATTCAGCAACGAATAAGACAGCCAAGGCCTCTGCCCTCATAGATCTTGCATCAAGCTGGGGAGACAGACAGTAAATAA
Seq C2 exon
AAATGGGATTATACTAAGTATCCTATACTGCTGTATCACTGATGCCAGGCCAGCAGCCTGGCATCACATGGAGTTGGTTGAAAAGAAGAATCTCAGGGCCAGGTGCAGTGGCCCACACCTGTAATCCCAGCACTTTAGGAGGCCAAGGCGGGTGGATCACTTGAGGCCAGGAGTTGGAGACCAGCCTGTCCAACATGGCGAAACACCATCTCTACTAAATATACAAAAATTAGCTGGGCATGGTAGCCCGCACCTGTAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-'0-1,'0-0,3-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTCTTCCCTTCCTCATCC
R:
CTCCTGGCCTCAAGTGATCCA
Band lengths:
253-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains