HsaEX1008874 @ hg38
Exon Skipping
Gene
ENSG00000163539 | CLASP2
Description
cytoplasmic linker associated protein 2 [Source:HGNC Symbol;Acc:HGNC:17078]
Coordinates
chr3:33644757-33663515:-
Coord C1 exon
chr3:33663445-33663515
Coord A exon
chr3:33658974-33659009
Coord C2 exon
chr3:33644757-33644903
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATTTGACCTCTTGGTTTCAGAGA
3' ss Score
7.04
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
ATTAGAAATGATATTTGCCAAATTTGATGAAGTGCAAAGTTCAGGCGGTATGATTTTGAGTGTCTGCAAAG
Seq A exon
AGAGCTCCCTGGACCATCTAATGGCTATGGGAGATG
Seq C2 exon
ATAAAAGCTTCGATGATGAAGAATCAGTGGATGGAAATAGGCCATCATCAGCTGCATCAGCCTTCAAGGTTCCTGCACCTAAAACATCCGGAAATCCTGCCAACAGTGCAAGGAAGCCTGGTTCAGCAGGTGGCCCTAAGGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163539_MULTIEX3-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.696 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(0.1=0.0)
A:
NO
C2:
NO
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGCAAAGTTCAGGCGGTA
R:
GGAACCTTGAAGGCTGATGCA
Band lengths:
115-151
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains